Biodiversity of the Planning for Integrated Environmental Response Coastal Survey in the St. Lawrence Estuary and Gulf (2017–2021)

The Planning for an Environmental Response (PIER) initiative falls under the umbrella of the Government of Canada’s Oceans Protection Plan (OPP), whose goal is preserving marine ecosystems vulnerable to increased transportation and the development of the marine industry. The PIERs’ main mandate is to acquire and update biological sensitivity data under its jurisdiction for preparation and response purposes in the event of an oil spill.

This dataset contains all observations of marine organisms noted during the analysis of 2959 underwater images sampled over a large extent of the coastal zone (≤10 m) of the Estuary and the Gulf of St. Lawrence (Quebec region). The dataset includes 21 490 occurrences of 150 taxa and informal categories including macroalgae, invertebrates and fish. Underwater images were collected between 2017 and 2021 according to a directed sampling protocol whose primary goal was to map large seaweed and eelgrass beds. Images were normally recorded as videos using a GoPro Hero camera installed on a pole and placed near the seabed from a small boat. The collected data served primarily as ground-truth data to validate coastal habitat mapping based on aerial photographs within the framework of the PIER's initiative.

The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "taxon_occurrence" file includes the original identifiers of the observed organisms (verbatimIdentification field), identification comments and their taxonomy.

Taxonomic names were verified on the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match has been put in the scientificNameID field in the occurrence file. Data quality control was performed using the R packages obistools and worrms. All sampling locations were plotted on a map to perform a visual check confirming that the latitude and longitude coordinates were within the described sampling area.

A visual dictionary was developed as an identification aid and accompanies this dataset. More data, including a visibility index, estimated macroalgae and eelgrass cover, substrate type and dominant macroalgae and animals were recorded but not included in this dataset. These data may be made available upon request.

Access and Use

Licence: government-open-license-canada

Data and Resources

Citation

Keywords

Dataset extent

Map data © OpenStreetMap contributors

Metadata Reference Date(s) April 13, 2022 (Publication)
April 13, 2022 (Revision)
Dataset Reference Date(s) July 31, 2017 (Creation)
Frequency of Update As Needed

Responsible Party 1
Name
Benjamin Grégoire
Affiliation
Pêches et Océans Canada
Email
Benjamin.Gregoire@dfo-mpo.gc.ca
Role
  • Author
  • Custodian
  • Owner
  • Point of Contact
Responsible Party 2
Name
Christine Desjardins
Affiliation
Pêches et Océans Canada
Email
Christine.Desjardins@dfo-mpo.gc.ca
Role
Point of Contact
Responsible Party 3
Name
Section Gestion de données - Direction des avis, information et soutien scientifiques
Affiliation
Pêches et Océans Canada
Email
gddaiss-dmsaisb@dfo-mpo.gc.ca
Role
  • Distributor
  • Point of Contact

Field Value
Title Biodiversity of the Planning for Integrated Environmental Response Coastal Survey in the St. Lawrence Estuary and Gulf (2017–2021)
Description

The Planning for an Environmental Response (PIER) initiative falls under the umbrella of the Government of Canada’s Oceans Protection Plan (OPP), whose goal is preserving marine ecosystems vulnerable to increased transportation and the development of the marine industry. The PIERs’ main mandate is to acquire and update biological sensitivity data under its jurisdiction for preparation and response purposes in the event of an oil spill.

This dataset contains all observations of marine organisms noted during the analysis of 2959 underwater images sampled over a large extent of the coastal zone (≤10 m) of the Estuary and the Gulf of St. Lawrence (Quebec region). The dataset includes 21 490 occurrences of 150 taxa and informal categories including macroalgae, invertebrates and fish. Underwater images were collected between 2017 and 2021 according to a directed sampling protocol whose primary goal was to map large seaweed and eelgrass beds. Images were normally recorded as videos using a GoPro Hero camera installed on a pole and placed near the seabed from a small boat. The collected data served primarily as ground-truth data to validate coastal habitat mapping based on aerial photographs within the framework of the PIER's initiative.

The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "taxon_occurrence" file includes the original identifiers of the observed organisms (verbatimIdentification field), identification comments and their taxonomy.

Taxonomic names were verified on the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match has been put in the scientificNameID field in the occurrence file. Data quality control was performed using the R packages obistools and worrms. All sampling locations were plotted on a map to perform a visual check confirming that the latitude and longitude coordinates were within the described sampling area.

A visual dictionary was developed as an identification aid and accompanies this dataset. More data, including a visibility index, estimated macroalgae and eelgrass cover, substrate type and dominant macroalgae and animals were recorded but not included in this dataset. These data may be made available upon request.

Keywords
Ocean Variables
  • Fish abundance and distribution
  • Macroalgal canopy cover and composition
  • Invertebrate abundance and distribution
Citation

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Scope Dataset
Status Completed
Metadata Dates
Metadata Date 1
Date
2022-04-13
Type
Publication
Metadata Date 2
Date
2022-04-13
Type
Revision
Resource Dates
Resource Date 1
Date
2017-07-31
Type
Creation
Maintenance and update frequency As Needed
Maintenance Note Generated from https://cioos-siooc.github.io/metadata-entry-form
Point of Contact
Point of Contact 1
Name
Benjamin Grégoire
Affiliation
Pêches et Océans Canada
Email
Benjamin.Gregoire@dfo-mpo.gc.ca
Role
  • Custodian
  • Point of Contact
Point of Contact 2
Name
Christine Desjardins
Affiliation
Pêches et Océans Canada
Email
Christine.Desjardins@dfo-mpo.gc.ca
Role
Point of Contact
Point of Contact 3
Name
Section Gestion de données - Direction des avis, information et soutien scientifiques
Affiliation
Pêches et Océans Canada
Email
gddaiss-dmsaisb@dfo-mpo.gc.ca
Role
Point of Contact
Responsible Party
Responsible Party 1
Name
Benjamin Grégoire
Affiliation
Pêches et Océans Canada
Email
Benjamin.Gregoire@dfo-mpo.gc.ca
Role
  • Author
  • Owner
Distributor
Distributor 1
Name
Section Gestion de données - Direction des avis, information et soutien scientifiques
Affiliation
Pêches et Océans Canada
Email
gddaiss-dmsaisb@dfo-mpo.gc.ca
Role
Distributor
Spatial Extent { "coordinates": [ [ [ -70.3, 47.4 ], [ -61.765, 47.4 ], [ -61.765, 50.471 ], [ -70.3, 50.471 ], [ -70.3, 47.4 ] ] ], "type": "Polygon" }
North Bounding Latitude 50.471
South Bounding Latitude 47.4
East Bounding Longitude -61.765
West Bounding Longitude -70.3
Temporal Extent
Begin
2017-07-31
End
2021-08-23
Vertical Extent
Min
0.0
Max
10.0
Default Locale French
Citation identifier
Code
10.26071/ogsl-90c40dba
XML Metadata File Location https://catalogue-waf.ogsl.ca/metadata-files/mpo/90c40dba-740d-473b-8489-1c4eb3331555.xml
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intervention environnementale intégrée dans l’estuaire et le golfe du Saint-Laurent (2017–2021)</gco:CharacterString> <lan:PT_FreeText> <lan:textGroup> <lan:LocalisedCharacterString locale="#en">Biodiversity of the Planning for Integrated Environmental Response Coastal Survey in the St. Lawrence Estuary and Gulf (2017–2021)</lan:LocalisedCharacterString> </lan:textGroup> </lan:PT_FreeText> </cit:title> <cit:date> <cit:CI_Date> <cit:date> <gco:Date>2017-07-31</gco:Date> </cit:date> <cit:dateType> <cit:CI_DateTypeCode codeList="http://standards.iso.org/iso/19115/resources/Codelists/cat/codelists.xml#CI_DateTypeCode" codeListValue="creation">creation</cit:CI_DateTypeCode> </cit:dateType> </cit:CI_Date> </cit:date> <cit:identifier> <mcc:MD_Identifier> <mcc:code> <gco:CharacterString>10.26071/ogsl-90c40dba</gco:CharacterString> </mcc:code> </mcc:MD_Identifier> </cit:identifier> <cit:citedResponsibleParty> <cit:CI_Responsibility> <cit:role> <cit:CI_RoleCode codeList="https://standards.iso.org/iso/19115/resources/Codelists/cat/codelists.xml#CI_RoleCode" codeListValue="owner"/> </cit:role> <cit:party> <cit:CI_Organisation> <cit:name> <gco:CharacterString>Pêches et Océans Canada</gco:CharacterString> </cit:name> <cit:contactInfo> <cit:CI_Contact> <cit:phone> <cit:CI_Telephone> <cit:number> <gco:CharacterString></gco:CharacterString> </cit:number> </cit:CI_Telephone> </cit:phone> <cit:address> <cit:CI_Address> <cit:deliveryPoint> <gco:CharacterString>850 route de la Mer</gco:CharacterString> </cit:deliveryPoint> <cit:city> <gco:CharacterString>Mont-Joli</gco:CharacterString> </cit:city> <cit:country> <gco:CharacterString>Canada</gco:CharacterString> </cit:country> </cit:CI_Address> </cit:address> <cit:onlineResource> <cit:CI_OnlineResource> <cit:linkage> <gco:CharacterString></gco:CharacterString> </cit:linkage> <cit:protocol> <gco:CharacterString>WWW:LINK</gco:CharacterString> </cit:protocol> <cit:function> <cit:CI_OnLineFunctionCode codeList="https://standards.iso.org/iso/19115/resources/Codelists/cat/codelists.xml#CI_OnLineFunctionCode" codeListValue="information"></cit:CI_OnLineFunctionCode> </cit:function> </cit:CI_OnlineResource> </cit:onlineResource> </cit:CI_Contact> </cit:contactInfo> <cit:individual> <cit:CI_Individual> <cit:name> <gco:CharacterString>Benjamin Grégoire</gco:CharacterString> </cit:name> <cit:contactInfo> <cit:CI_Contact> <cit:address> <cit:CI_Address> <cit:deliveryPoint> <gco:CharacterString></gco:CharacterString> </cit:deliveryPoint> <cit:city> <gco:CharacterString></gco:CharacterString> </cit:city> <cit:country> <gco:CharacterString></gco:CharacterString> </cit:country> <cit:electronicMailAddress> <gco:CharacterString>Benjamin.Gregoire@dfo-mpo.gc.ca</gco:CharacterString> </cit:electronicMailAddress> </cit:CI_Address> </cit:address> </cit:CI_Contact> </cit:contactInfo> <cit:positionName> <gco:CharacterString>Biologiste</gco:CharacterString> </cit:positionName> </cit:CI_Individual> </cit:individual> </cit:CI_Organisation> </cit:party> </cit:CI_Responsibility> </cit:citedResponsibleParty> <cit:citedResponsibleParty> <cit:CI_Responsibility> <cit:role> <cit:CI_RoleCode codeList="https://standards.iso.org/iso/19115/resources/Codelists/cat/codelists.xml#CI_RoleCode" codeListValue="author"/> </cit:role> <cit:party> <cit:CI_Organisation> <cit:name> <gco:CharacterString>Pêches et Océans Canada</gco:CharacterString> </cit:name> <cit:contactInfo> <cit:CI_Contact> <cit:phone> <cit:CI_Telephone> <cit:number> <gco:CharacterString></gco:CharacterString> </cit:number> </cit:CI_Telephone> </cit:phone> <cit:address> <cit:CI_Address> <cit:deliveryPoint> <gco:CharacterString>850 route de la Mer</gco:CharacterString> </cit:deliveryPoint> <cit:city> <gco:CharacterString>Mont-Joli</gco:CharacterString> </cit:city> <cit:country> <gco:CharacterString>Canada</gco:CharacterString> </cit:country> </cit:CI_Address> </cit:address> <cit:onlineResource> <cit:CI_OnlineResource> <cit:linkage> <gco:CharacterString></gco:CharacterString> </cit:linkage> <cit:protocol> <gco:CharacterString>WWW:LINK</gco:CharacterString> </cit:protocol> <cit:function> <cit:CI_OnLineFunctionCode codeList="https://standards.iso.org/iso/19115/resources/Codelists/cat/codelists.xml#CI_OnLineFunctionCode" codeListValue="information"></cit:CI_OnLineFunctionCode> </cit:function> </cit:CI_OnlineResource> </cit:onlineResource> </cit:CI_Contact> </cit:contactInfo> <cit:individual> <cit:CI_Individual> <cit:name> <gco:CharacterString>Benjamin Grégoire</gco:CharacterString> </cit:name> <cit:contactInfo> <cit:CI_Contact> <cit:address> <cit:CI_Address> <cit:deliveryPoint> <gco:CharacterString></gco:CharacterString> </cit:deliveryPoint> <cit:city> <gco:CharacterString></gco:CharacterString> </cit:city> <cit:country> <gco:CharacterString></gco:CharacterString> </cit:country> <cit:electronicMailAddress> <gco:CharacterString>Benjamin.Gregoire@dfo-mpo.gc.ca</gco:CharacterString> </cit:electronicMailAddress> </cit:CI_Address> </cit:address> </cit:CI_Contact> </cit:contactInfo> <cit:positionName> <gco:CharacterString>Biologiste</gco:CharacterString> </cit:positionName> </cit:CI_Individual> </cit:individual> </cit:CI_Organisation> </cit:party> </cit:CI_Responsibility> </cit:citedResponsibleParty> </cit:CI_Citation> </mri:citation> <mri:abstract xsi:type="lan:PT_FreeText_PropertyType"> <gco:CharacterString>L’initiative « Planification pour une intervention environnementale intégrée » (PIEI) est sous l’égide du Plan de Protection des Océans (PPO) du gouvernement du Canada, un programme qui vise à préserver les écosystèmes marins vulnérables de l’augmentation du transport et du développement de l’industrie maritime. L’initiative de la PIEI a comme principal mandat de mettre à jour et de compléter les informations sur les sensibilités biologiques sous sa juridiction pour la préparation et l’intervention advenant un déversement d’hydrocarbures. Ce jeu de données contient toutes les observations d’organismes marins identifiés lors de l’analyse de 2959 images sous-marines échantillonnées sur une large étendue de la zone côtière (≤10 m) de l’estuaire et du golfe du Saint-Laurent (région du Québec). Le jeu de données comprend 21 490 occurrences de 150 taxons et catégories informelles, incluant des macroalgues, des invertébrés et des poissons. Les images sous-marines ont été recueillies entre 2017 et 2021, selon un protocole d’échantillonnage dirigé dont le but premier était de cartographier les grands bancs d’algues et les zostéraies. Les images étaient normalement enregistrées sous forme de vidéos à l’aide d’une caméra GoPro Hero installée sur une perche et placée près du fond marin à partir d’une petite embarcation. Les données collectées ont principalement servi de données de validation pour la cartographie des habitats côtiers basée sur des photographies aériennes, dans le cadre de l’initiative de la PIEI. Les deux fichiers fournis (format DarwinCore) sont complémentaires et sont liés par la clé « eventID ». Le fichier «event_information» comprend les informations génériques de l&#39;activité, notamment la date et la localisation. Le fichier «taxon_occurrence» comprend les identifiants originaux des organismes observés (champ verbatimIdentification), des commentaires d’identification et leur taxonomie. Tous les noms taxonomiques ont été vérifiés sur le registre mondial des espèces marines (WoRMS) pour correspondre aux normes reconnues. La correspondance WoRMS a été placée dans le champ scientificNameID du fichier d’occurrence. Le contrôle de la qualité des données a été effectué à l’aide des paquets R obistools et worrms. Tous les emplacements d’échantillonnage ont été reportés sur une carte afin d’effectuer un contrôle visuel confirmant que les coordonnées de latitude et de longitude se trouvaient dans la zone d’échantillonnage décrite. Un dictionnaire visuel a été développé comme un outil d&#39;aide à l’identification et accompagne ce jeu de données. D’autres données, notamment un indice de visibilité, une estimation de la couverture de macroalgues et de zostère, le type de substrat et les macroalgues et animaux dominants ont été enregistrés, mais ne sont pas inclus dans ce jeu de données. Ces données peuvent être mises à disposition sur demande.</gco:CharacterString> <lan:PT_FreeText> <lan:textGroup> <lan:LocalisedCharacterString locale="#en">The Planning for an Environmental Response (PIER) initiative falls under the umbrella of the Government of Canada’s Oceans Protection Plan (OPP), whose goal is preserving marine ecosystems vulnerable to increased transportation and the development of the marine industry. The PIERs’ main mandate is to acquire and update biological sensitivity data under its jurisdiction for preparation and response purposes in the event of an oil spill. This dataset contains all observations of marine organisms noted during the analysis of 2959 underwater images sampled over a large extent of the coastal zone (≤10 m) of the Estuary and the Gulf of St. Lawrence (Quebec region). The dataset includes 21 490 occurrences of 150 taxa and informal categories including macroalgae, invertebrates and fish. Underwater images were collected between 2017 and 2021 according to a directed sampling protocol whose primary goal was to map large seaweed and eelgrass beds. Images were normally recorded as videos using a GoPro Hero camera installed on a pole and placed near the seabed from a small boat. The collected data served primarily as ground-truth data to validate coastal habitat mapping based on aerial photographs within the framework of the PIER&#39;s initiative. The two files provided (DarwinCore format) are complementary and are linked by the &#34;eventID&#34; key. The &#34;event_information&#34; file includes generic event information, including date and location. The &#34;taxon_occurrence&#34; file includes the original identifiers of the observed organisms (verbatimIdentification field), identification comments and their taxonomy. Taxonomic names were verified on the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match has been put in the scientificNameID field in the occurrence file. Data quality control was performed using the R packages obistools and worrms. All sampling locations were plotted on a map to perform a visual check confirming that the latitude and longitude coordinates were within the described sampling area. A visual dictionary was developed as an identification aid and accompanies this dataset. More data, including a visibility index, estimated macroalgae and eelgrass cover, substrate type and dominant macroalgae and animals were recorded but not included in this dataset. 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<gco:CharacterString></gco:CharacterString> </cit:positionName> </cit:CI_Individual> </cit:individual> </cit:CI_Organisation> </cit:party> </cit:CI_Responsibility> </mrd:distributorContact> </mrd:MD_Distributor> </mrd:distributor> <mrd:transferOptions> <mrd:MD_DigitalTransferOptions> <mrd:onLine> <cit:CI_OnlineResource> <cit:linkage> <gco:CharacterString>https://catalogue.ogsl.ca/data/mpo/ca-cioos_90c40dba-740d-473b-8489-1c4eb3331555/piei_event_information_estuary_gulf_2017-2021.csv</gco:CharacterString> </cit:linkage> <cit:protocol> <gco:CharacterString>WWW:LINK</gco:CharacterString> </cit:protocol> <cit:name> <gco:CharacterString>piei_event_information_estuary_gulf_2017-2021.csv</gco:CharacterString> </cit:name> <cit:description xsi:type="lan:PT_FreeText_PropertyType"> <gco:CharacterString>Le fichier &#34;event_information_estuary_gulf_2017-2021&#34; comprend des informations génériques sur les activités, notamment leurs dates et leurs localisations.</gco:CharacterString> 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