Genetic Stock Identification of Coho Salmon (at-sea analysis) from the 2019 Gulf of Alaska International Year of the Salmon Expedition

Genetic stock identification data by single nucleotide polymorphism (SNP) sequencing conducted at-sea for coho salmon collected in the Northeast Pacific Ocean. These data were collected as part of the International Year of the Salmon (IYS) Gulf of Alaska High Seas Expedition conducted in February and March 2019, to further improve the understanding of factors impacting salmon early marine winter survival. In-field genotype-by-sequencing technology was used for genetic stock identification by single nucleotide polymorphism sequencing (SNP GSI) of salmon utilizing the Oxford Nanopore Technologies minION third generation sequencer. The field-based results will be validated with results replicated at the genomics lab at the Pacific Biological Station, DFO, Nanaimo, BC on the established Ion-Torrent based workflow as well as the data read from one of the coded-wire tagged individuals included in this analysis.

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Licence: Creative Commons Attribution 4.0

Data and Resources

Citation

Keywords

Dataset extent

Map data © OpenStreetMap contributors

Metadata Reference Date(s) February 01, 2022 (Publication)
February 01, 2022 (Revision)
Dataset Reference Date(s) February 18, 2019 (Creation)
May 19, 2021 (Publication)
Frequency of Update As Needed

Responsible Party 1
Affiliation
North Pacific Anadromous Fish Commission
Email
secretariat@npafc.org
Role
Publisher
Responsible Party 2
Name
Christoph Deeg
Affiliation
University of British Columbia
Email
Christoph.Deeg@dfo-mpo.gc.ca
Role
  • Author
  • Custodian
  • Owner
Responsible Party 3
Name
Chrys Neville
Affiliation
Fisheries and Oceans Canada
Email
Chrys.Neville@dfo-mpo.gc.ca
Role
Author
Responsible Party 4
Name
Charlie Waters
Affiliation
National Oceanic and Atmospheric Administration
Email
charlie.waters@noaa.gov
Role
Author
Responsible Party 5
Name
Terry Beacham
Affiliation
Fisheries and Oceans Canada
Email
Terry.Beacham@dfo-mpo.gc.ca
Role
Author
Responsible Party 6
Name
Shigehiko Urawa
Affiliation
Tohoku National Fisheries Research Institute
Email
urawa@affrc.go.jp
Role
Author
Responsible Party 7
Name
Richard Beamish
Affiliation
Fisheries and Oceans Canada
Email
rabeamish@shaw.ca
Role
Author
Responsible Party 8
Name
Kristi Miller-Saunders
Affiliation
Fisheries and Oceans Canada
Email
Kristi.Saunders@dfo-mpo.gc.ca
Role
Principal Investigator
Responsible Party 9
Affiliation
Hakai Institute
Email
data@hakai.org
Role
Distributor

Field Value
Title Genetic Stock Identification of Coho Salmon (at-sea analysis) from the 2019 Gulf of Alaska International Year of the Salmon Expedition
Description

Genetic stock identification data by single nucleotide polymorphism (SNP) sequencing conducted at-sea for coho salmon collected in the Northeast Pacific Ocean. These data were collected as part of the International Year of the Salmon (IYS) Gulf of Alaska High Seas Expedition conducted in February and March 2019, to further improve the understanding of factors impacting salmon early marine winter survival. In-field genotype-by-sequencing technology was used for genetic stock identification by single nucleotide polymorphism sequencing (SNP GSI) of salmon utilizing the Oxford Nanopore Technologies minION third generation sequencer. The field-based results will be validated with results replicated at the genomics lab at the Pacific Biological Station, DFO, Nanaimo, BC on the established Ion-Torrent based workflow as well as the data read from one of the coded-wire tagged individuals included in this analysis.

Keywords
Ocean Variables Fish abundance and distribution
Citation

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Scope Dataset
Status Completed
Metadata Dates
Metadata Date 1
Date
2022-02-01
Type
Publication
Metadata Date 2
Date
2022-02-01
Type
Revision
Resource Dates
Resource Date 1
Date
2019-02-18
Type
Creation
Resource Date 2
Date
2021-05-19
Type
Publication
Maintenance and update frequency As Needed
Maintenance Note Generated from https://cioos-siooc.github.io/metadata-entry-form
Point of Contact
Point of Contact 1
Name
Christoph Deeg
Affiliation
University of British Columbia
Email
Christoph.Deeg@dfo-mpo.gc.ca
Role
Custodian
Responsible Party
Responsible Party 1
Affiliation
North Pacific Anadromous Fish Commission
Email
secretariat@npafc.org
Role
Publisher
Responsible Party 2
Name
Christoph Deeg
Affiliation
University of British Columbia
Email
Christoph.Deeg@dfo-mpo.gc.ca
Role
  • Author
  • Owner
Responsible Party 3
Name
Chrys Neville
Affiliation
Fisheries and Oceans Canada
Email
Chrys.Neville@dfo-mpo.gc.ca
Role
Author
Responsible Party 4
Name
Charlie Waters
Affiliation
National Oceanic and Atmospheric Administration
Email
charlie.waters@noaa.gov
Role
Author
Responsible Party 5
Name
Terry Beacham
Affiliation
Fisheries and Oceans Canada
Email
Terry.Beacham@dfo-mpo.gc.ca
Role
Author
Responsible Party 6
Name
Shigehiko Urawa
Affiliation
Tohoku National Fisheries Research Institute
Email
urawa@affrc.go.jp
Role
Author
Responsible Party 7
Name
Richard Beamish
Affiliation
Fisheries and Oceans Canada
Email
rabeamish@shaw.ca
Role
Author
Responsible Party 8
Name
Kristi Miller-Saunders
Affiliation
Fisheries and Oceans Canada
Email
Kristi.Saunders@dfo-mpo.gc.ca
Role
Principal Investigator
Distributor
Distributor 1
Affiliation
Hakai Institute
Email
data@hakai.org
Role
Distributor
Spatial Extent { "coordinates": [ [ [ -128.513667, 48.311 ], [ -143.000167, 56.668667 ], [ -147.503333, 56.667333 ], [ -147.500667, 47.668333 ], [ -136.997, 47.666833 ], [ -129.9175, 48.191167 ], [ -128.513667, 48.311 ] ] ], "type": "Polygon" }
North Bounding Latitude 47.666833
South Bounding Latitude 56.668667
East Bounding Longitude -128.513667
West Bounding Longitude -147.503333
Temporal Extent
Begin
2019-02-18
End
2019-03-14
Vertical Extent
Min
0.0
Max
40.0
Default Locale English
Citation identifier
Code
10.1101/2021.05.27.445905
XML Metadata File Location https://pac-dev1.cioos.org/dev/metadata/iys/genetic_stock_identification_o_1da57.xml
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These data were collected as part of the International Year of the Salmon (IYS) Gulf of Alaska High Seas Expedition conducted in February and March 2019, to further improve the understanding of factors impacting salmon early marine winter survival. In-field genotype-by-sequencing technology was used for genetic stock identification by single nucleotide polymorphism sequencing (SNP GSI) of salmon utilizing the Oxford Nanopore Technologies minION third generation sequencer. The field-based results will be validated with results replicated at the genomics lab at the Pacific Biological Station, DFO, Nanaimo, BC on the established Ion-Torrent based workflow as well as the data read from one of the coded-wire tagged individuals included in this analysis.</gco:CharacterString> <lan:PT_FreeText> <lan:textGroup> <lan:LocalisedCharacterString locale="#fr">Données d&#39;identification des stocks génétiques par séquençage du polymorphisme unique nucléotidique (SNP) effectué en mer pour le saumon coho récolté dans l&#39;océan Pacifique Nord-Est. Ces données ont été recueillies dans le cadre de l&#39;expédition en haute mer du golfe d&#39;Alaska de l&#39;Année internationale du saumon (IYS) menée en février et mars 2019, afin d&#39;améliorer encore la compréhension des facteurs ayant une incidence sur la survie hivernale du saumon en début de mer. La technologie de génotype par séquençage sur le terrain a été utilisée pour l&#39;identification du stock génétique par séquençage de polymorphisme à nucléotide unique (SNP GSI) de saumons utilisant le séquenceur de troisième génération MiniOn d&#39;Oxford Nanopore Technologies. 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